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Compare and Analyze char patterns

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Giulio
Giulio 2013-6-10
Hi... i'm trying to compare and analyze different miRNAs for a project
I have a cell matrix with the Dot-Bracket notation for the miRNAs and I'm trying to compare and possibly identify patterns in two different groups in order to study the secondary structure...
Since it's not an amminoacidic or nucleotidic sequence normal alignment tools avaible in matlab are useless... what should I use?
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