Hi,
From my understanding you are trying to run the above logic with different values of sd and need to store the Ea, E0 values in an array. The the use of functions and arrayfun would help you achive your task. The following code snippet would help you in giving the first impression of doing it.
s = 0:0.01:0.1;
[Ea, E0] = arrayfun(@myFunction,s);
function [Ea, E0] = myFunction (sd)
% Above code enclosed inside here
%Model the effect of noise with that particular sd value
f=10; %frequency of cosine (Hz)
fs=100; %sampling frequency (Hz)
Ti = 1/fs; %time between samples (s)
pheta = pi/6; %phase
t = 0:Ti:9.99; %time interval set between 0 and N-1
B = cos(2*pi*f*t + pheta); %create vector y containing N samples of the signal
y = B'; %transpose matrix B
Ns = 1000; %number of samples
a = 2*pi*f*Ti*(0:Ns-1)'; %create an array
X = [cos(a) -sin(a)]; %create a matrix
v = mldivide(X,y); %find the elements vector containing br and bi
% Task 2 - Noise
Ndata1 = y + randn(1000,1)*sd;
Ndata2 = y + randn(1000,1)*sd;
Ndata3 = y + randn(1000,1)*sd;
Ndata4 = y + randn(1000,1)*sd;
Ndata5 = y + randn(1000,1)*sd;
Ndata6 = y + randn(1000,1)*sd;
%calculates the v matrix for each experiment
v1 = mldivide(X,Ndata1);
v2 = mldivide(X,Ndata2);
v3 = mldivide(X,Ndata3);
v4 = mldivide(X,Ndata4);
v5 = mldivide(X,Ndata5);
v6 = mldivide(X,Ndata6);
%Estimates the A value from each of the six experiments data
Aest1 = sqrt(v1(1)*v1(1)+v1(2)*v1(2));
Aest2 = sqrt(v2(1)*v2(1)+v2(2)*v2(2));
Aest3 = sqrt(v3(1)*v3(1)+v3(2)*v3(2));
Aest4 = sqrt(v4(1)*v4(1)+v4(2)*v4(2));
Aest5 = sqrt(v5(1)*v5(1)+v5(2)*v5(2));
Aest6 = sqrt(v6(1)*v6(1)+v6(2)*v6(2));
%Estimates theta for the six expermients
phetatest1 = atan(v1(2)/v1(1));
phetatest2 = atan(v2(2)/v2(1));
phetatest3 = atan(v3(2)/v3(1));
phetatest4 = atan(v4(2)/v4(1));
phetatest5 = atan(v5(2)/v5(1));
phetatest6 = atan(v6(2)/v6(1));
%Estimates the Ea value based on these A values
Ea = sqrt(((Aest1-1)*(Aest1-1)+(Aest2-1)*(Aest2-1)+(Aest3-1)*(Aest3-1)+(Aest4-1)*(Aest4-1)+(Aest5-1)*(Aest5-1)+(Aest6-1)*(Aest6-1))*(1/6));
%Estimates the Ea value based on these A values
E0 = sqrt((phetatest1-pheta)*(phetatest1-pheta)+(phetatest2-pheta)*(phetatest2-pheta)+(phetatest3-pheta)*(phetatest3-pheta)+(phetatest4-pheta)*(phetatest4-pheta)+(phetatest5-pheta)*(phetatest5-pheta)+(phetatest6-pheta)*(phetatest6-pheta)*(1/6));
end