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iddoweiner/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii

version 2.0 (10.4 MB) by

Coding Sequence optimization for Chlamydomonas reinhardtii

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Updated

This program provides an implementation for carrying out the sequence optimization described in:
'Enhancing Heterologous Expression in C. reinhardtii by Transcript Sequence Optimization'
Weiner et al., The Plant Journal, 2018
This is a standalone application for optimizing DNA sequences meant for achieving high expression in Chlamydomonas reinhardtii (the MATLAB source code is available too).
The fascinating Chlamydomonas picture used as this app's logo was taken by Gerd Guenther:
(https://www.allposters.com/-st/Gerd-Guenther-Posters_c180530_.htm)

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Updates

2.0

highlighted the availability of the source code

2.0

We also added the MATLAB source code for the convenience of MATLAB users

2.0

We improved the GUI

2.0

Find both source code and a GUI to run it in the linked Github repository

2.0

I added an .exe file for installing a GUI that conveniently runs our optimization algorithm "behind the scenes" and returns the optimized sequence.
This file is located in the linked Github repository.

MATLAB Release
MATLAB 8.5 (R2015a)

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