Catrex GUI

版本 1.0.0 (444.4 KB) 作者: Jesus Perez
Graphical user interface to extract calcium transients from imaging experiments. Get raster of neuronal activity from a raw tiff file.
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更新时间 2020/7/28
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GUI in MATLAB for automated calcium transients extraction from imaging experiments.

1. Load tiff file with the sequence of images acquired.
2. Perform non-rigid (or rigid) motion correction.
3. Find cells based on Suite2P algorithm (Pachitariu et al., 2016).
4. Evaluate ROIs identified (area, circularity, perimeter, eccentricity and overlapping).
5. Extract calcium transients using local neuropil as the basal of fluorescence.
6. Evaluate peak signal-to-noise ratio (PSNR).
7. Perform spike inference (foopsi; Friedrich & Paninski, 2016).
8. Get raster activity, a binary matrix where each row is the activity of a single ROI.

Output of a structure variable with all data analyzed

引用格式

Jesus Perez (2024). Catrex GUI (https://github.com/PerezOrtegaJ/Catrex_GUI/releases/tag/V1.0.0), GitHub. 检索来源 .

MATLAB 版本兼容性
创建方式 R2020a
兼容任何版本
平台兼容性
Windows macOS Linux
类别
在 Help Center 和 MATLAB Answers 中查找有关 Microscopy 的更多信息
致谢

参考作品: Suite2P, CaImAn

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Deconvolution Caiman

Suite2P_JP

common

版本 已发布 发行说明
1.0.0

要查看或报告此来自 GitHub 的附加功能中的问题，请访问其 GitHub 仓库。
要查看或报告此来自 GitHub 的附加功能中的问题，请访问其 GitHub 仓库。