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How to export simbiology model as MATLAB code
I suggest taking the output from |getequations| and saving it to a file. You may be able to manually edit that file to create a ...

7 years 前 | 2

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Simbiology: Generate reactions with a loop
The immediate problem is that MATLAB uses 1-based indexes when indexing into vectors, so you need to make sure that you start at...

7 years 前 | 0

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Error in livescript with the clustergram function
I believe clustergram needs to be updated to work properly in Live Scripts (MLX files). One workaround is to use a regular scrip...

7 years 前 | 0

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'view' - example: "Error using uimenu"
I believe biograph needs to be updated to work properly in Live Scripts (MLX files). One workaround is to use a regular script (...

7 years 前 | 1

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showing strings of text in heatmap (R2017a) images
The example you link to is for a different heatmap function that someone created and uploaded to the MathWorks File Exchange. To...

7 years 前 | 0

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How can I interpret this plot in the output of SimBiology?
This is |normplot| of the residuals. You can read more about |normplot| <https://www.mathworks.com/help/stats/normplot.html here...

7 years 前 | 0

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How can I get the number of logs in SimBiology?
If I understand your question, this is not currently possible. In fact, I would avoid creating a model where parameter values ch...

7 years 前 | 0

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SimBiology error with e^time in reaction rate
Hi, The message about being unable to perform dimensional analysis is a warning, not an error. Your simulation results should...

7 years 前 | 1

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How to implement a covariate in SimBiology?
If I understand correctly, you seem to be asking two slightly different things. You're asking how to implement a covariate model...

7 years 前 | 0

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I want download and I apply Simbiology model
Yes, you need SimBiology. This model was created to demonstrate the functionality of SimBiology for PBPK. If you don't have a li...

7 years 前 | 0

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can you convert *.m to *.sbproj files?
You will need to manually convert your ODE model to a SimBiology model. You may find it easiest to convert your ODEs to rate rul...

7 years 前 | 0

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Huge error while using data fitting in simbiology
Bad fits like this can be caused by poor/insufficient data, problems with the model, or problems with the fit. It's difficult to...

7 years 前 | 1

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Integration Tolerance Not Met in SimBiology after sbioaccelerate
In addition to Joe's excellent suggestion, here are my thoughts: The complex numbers are the source of the problem. The accel...

7 years 前 | 2

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SimBiology sensitivity analysis - "Complex values cannot be converted to logicals"
The short answer is that you either need to change your model to make it compatible with SimBiology's sensitivity analysis techn...

7 years 前 | 1

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Type 1 diabetic patient in SimBiology
From my quick review of the papers cited in this SimBiology example, none of these variants model type 1 diabetes. The paper say...

7 years 前 | 0

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Issue in Simbiology Stochastic Simulations
Which stochastic solver are you using? If you're using 'ssa', then you will probably see simulation times increase with the numb...

7 years 前 | 1

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SimBiology insulindemo does not load variants in the parameters
Hi Manuel, Are you using R2017a? There is a bug in this release that affects this particular demo. Specifically, when a dose ...

7 years 前 | 1

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How to do Bayesian Parameter Estimation using Optimization in Simbiology
The <https://www.mathworks.com/help/simbio/fit-pkpd-model-to-data.html SimBiology documentation> describes different ways to est...

7 years 前 | 0

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SimBiology :: controlling a species concentration using a custom user-defined input function
Hi, First off, if you want the species to vary over time, then you'll need to set the ConstantAmount property to false. Ne...

7 years 前 | 0

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How can I use a Matlab function in SimBiology?
Hi Violeta, I will first directly answer your question and then provide an alternate solution. First, to use your function...

7 years 前 | 1

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已回答
GO = geneont ('LIVE', true) doesn't work.
I cannot reproduce this problem, but my best guess is that you need to increase your Java Heap Size. You can find instructions o...

7 years 前 | 0

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Trying to write a 3 compartment model
Hi Ryan, Yes, you can use SimBiology to create compartmental models and apply multiple doses. If you'd like more guidance, I ...

7 years 前 | 0

7 years 前 | 0

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Steady state conditions in Simbiology
Hi Francesco, If I understand your question correctly, you are interested in finding concentrations/amounts of the states in...

7 years 前 | 0

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Bioinformatics tool box 2016a
No, the Bioinformatics Toolbox should work in all versions of MATLAB. Are you having trouble <https://www.mathworks.com/matla...

7 years 前 | 0

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SimBiology not recognizing my Optimization Toolbox
Hi, SimBiology uses the <https://www.mathworks.com/help/matlab/ref/license.html license> function to confirm whether the Opti...

7 years 前 | 0

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Sundials Solver in MATLAB/Simulink
If your goal is to solve differential algebraic equations, you can already do that using the ODE solvers provided with MATLAB. H...

7 years 前 | 0

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Applying Variants in Simbiology for Different Datasets during Parameter Estimation
Today, you cannot directly apply group-specific variants during fitting. (But this is definitely on our radar as something custo...

7 years 前 | 1

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How can I simulate a 1-compartment PK and Indirect Turnover PD Model within the Simbiology Graphical Interface?
<https://www.mathworks.com/academia/courseware/advanced-pk-pd-with-matlab-and-simbiology.html Here> are course materials that in...

7 years 前 | 0

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How can I export the Simulated Parameter Scan Results in Simbiology for export into one table rather than separate tabs in a spreadsheet?
Hi Andy, You can use the “Calculate Statistics” section in the Task Editor in the SimBiology Desktop (under Explorer Tools)....

7 years 前 | 0

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