Image overlap while performing image transformation

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I have two images as defined below.
Screen Shot 2018-11-13 at 6.36.42 PM.png
I took 6 distinct points from each image and from pseudo inverse, I created a transformation matrix T as
T = [X(1) X(4) 0;
X(2) X(5) 0;
X(3) X(6) 1
];
Now, I want to apply this transformation on image and overlap it on original image. I am reading imwarp. I cam apply transformation but I am not sure how can I overlap it on the original image where it originally belongs. I have also tried
tform = maketform('affine',[X(1) X(4) 0; X(2) X(5) 0; X(3) X(6) 1]);
imageRegistered = imtransform(handles.mainImageSec ,tform, 'XData',[1 W], 'YData', [1 H]);
But results are extremely weird.
What I want is something like this
Screen Shot 2018-11-13 at 6.40.16 PM.png

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