Cosine Similarity using BERT

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I am using BERT to calculate similarities in Question Answering. I have encoded my Question data using
data.Tokens = encode(mdl.Tokenizer,data.Questions) which returns me a cell array.
Next, I proceeded to encode new text to test the similiarity with the already encoded Questions in the database: testTokens = encode(mdl.Tokenizer,text)
However, I am imable to use the cosineSimilarity(data.Tokens,testTokens) and I receive an error that says:
Input must be a matrix, a tokenizedDocument array, a bagOfWords model, a bagOfNgrams model, a string array of words, or a cell array of character vectors.
Do I need padding here or reshape of my cell vectors?

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Divyam Gupta
Divyam Gupta 2021-6-30
Hi Nicholas, I notice that you're facing an issue while computing the cosine similarity using a text encoder. As per the documentation mentioned at https://www.mathworks.com/help/textanalytics/ref/cosinesimilarity.html#d123e8335 the cosineSimilarity function takes a matrix to compute the similarity between two documents.
Since the encoded vector sizes for each of the questions is different, constructing a matrix might be difficult. You can do a pairwise comparision between the data.Tokens and the testTokens to compute the similarities. This can be achieved by running a nested loop while simultaneously storing the similarity scores.
Hope this helps.

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