CASE (Cluster & Analyse Sound Events)

版本 1.2.1 (2.3 MB) 作者: Sebastian Schneider
A tool to evaluate bioacoustic studies easily and automatically
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更新时间 2022/8/11

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By means of this tool it is possible to extract up to 44 features of an animal sound in different ways. In addition, the tool includes various clustering algorithms (community detection; affinity propagation; HDBSCAN and fuzzy clustering) as well as algorithms to detect similarities between signals (k-nearest-neighbor; jaccard; dynamic-time-warping) in order to effectively classify animal sounds. The tool uses a graphical user interface to allow the user to work with the software as easily and intuitively as possible.
The following algorithms were adopted:
Affinity Propagation:
Kaijun Wang (2021). Adaptive Affinity Propagation clustering (https://www.mathworks.com/matlabcentral/fileexchange/18244-adaptive-affinity-propagation-clustering), MATLAB Central File Exchange. Retrieved March 1, 2021.
Community Detection:
Athanasios Kehagias (2021). Community Detection Toolbox (https://www.mathworks.com/matlabcentral/fileexchange/45867-community-detection-toolbox), MATLAB Central File Exchange. Retrieved March 1, 2021.
HDBSCAN:
Jordan Sorokin (2021). Jorsorokin/HDBSCAN (https://github.com/Jorsorokin/HDBSCAN), GitHub. Retrieved March 1, 2021.
NMI:
Mo Chen (2021). Normalized Mutual Information (https://www.mathworks.com/matlabcentral/fileexchange/29047-normalized-mutual-information), MATLAB Central File Exchange. Retrieved March 1, 2021.
t-SNE:
Laurens van der Maaten & Geoffrey Hinton
https://lvdmaaten.github.io/tsne/

引用格式

Schneider, Sebastian, et al. “Introducing the Software CASE (Cluster and Analyze Sound Events) by Comparing Different Clustering Methods and Audio Transformation Techniques Using Animal Vocalizations.” Animals, vol. 12, no. 16, MDPI AG, Aug. 2022, p. 2020, doi:10.3390/ani12162020.

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CASE(Cluster_and_Analyse_Sound_Events)

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Algorithms

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Auxiliary

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/ClusterValidity

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Cluster_Number

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Evaluation

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Experiments

CASE(Cluster_and_Analyse_Sound_Events)/Community_detection/ComDetTBv090/Graphs

CASE(Cluster_and_Analyse_Sound_Events)/HDBSCAN/source

CASE(Cluster_and_Analyse_Sound_Events)/HDBSCAN/source/functions

CASE(Cluster_and_Analyse_Sound_Events)/ap_cluster

CASE(Cluster_and_Analyse_Sound_Events)/nmi

CASE(Cluster_and_Analyse_Sound_Events)/t-SNE

版本 已发布 发行说明
1.2.1

citation has been adjusted
1.2.0

Some acoustic features have been renamed
Fixed a bug that prevented loading a single vocalization into the software.
1.1.0

Now includes the ability to create cochleagrams and mel spectrograms.
1.0.0