# resubLoss

Resubstitution classification loss for multiclass error-correcting output codes (ECOC) model

## Description

returns the classification loss by resubstitution (`L`

= resubLoss(`Mdl`

)`L`

) for the
multiclass error-correcting output codes (ECOC) model `Mdl`

using the
training data stored in `Mdl.X`

and the corresponding class labels stored
in `Mdl.Y`

. By default, `resubLoss`

uses the classification error to compute `L`

.

The classification loss (`L`

) is a generalization or resubstitution
quality measure. Its interpretation depends on the loss function and weighting scheme, but
in general, better classifiers yield smaller classification loss values.

returns the classification loss with additional options specified by one or more name-value
pair arguments. For example, you can specify the loss function, decoding scheme, and
verbosity level.`L`

= resubLoss(`Mdl`

,`Name,Value`

)

## Examples

### Resubstitution Loss of ECOC Model

Compute the resubstitution loss for an ECOC model with SVM binary learners.

Load Fisher's iris data set. Specify the predictor data `X`

and the response data `Y`

.

```
load fisheriris
X = meas;
Y = species;
```

Train an ECOC model using SVM binary classifiers. Standardize the predictors using an SVM template, and specify the class order.

```
t = templateSVM('Standardize',true);
classOrder = unique(Y)
```

`classOrder = `*3x1 cell*
{'setosa' }
{'versicolor'}
{'virginica' }

Mdl = fitcecoc(X,Y,'Learners',t,'ClassNames',classOrder);

`t`

is an SVM template object. During training, the software uses default values for empty properties in `t`

. `Mdl`

is a `ClassificationECOC`

model.

Estimate the resubstitution classification error, which is the default classification loss.

L = resubLoss(Mdl)

L = 0.0267

The ECOC model misclassifies 2.67% of the training-sample irises.

### Determine ECOC Model Quality Using Custom Resubstitution Loss

Determine the quality of an ECOC model by using a custom loss function that considers the minimal binary loss for each observation.

Load Fisher's iris data set. Specify the predictor data `X`

, the response data `Y`

, and the order of the classes in `Y`

.

load fisheriris X = meas; Y = categorical(species); classOrder = unique(Y) % Class order

`classOrder = `*3x1 categorical*
setosa
versicolor
virginica

`rng(1); % For reproducibility`

Train an ECOC model using SVM binary classifiers. Standardize the predictors using an SVM template, and specify the class order.

t = templateSVM('Standardize',true); Mdl = fitcecoc(X,Y,'Learners',t,'ClassNames',classOrder);

`t`

is an SVM template object. During training, the software uses default values for empty properties in `t`

. `Mdl`

is a `ClassificationECOC`

model.

Create a function that takes the minimal loss for each observation, then averages the minimal losses for all observations. `S`

corresponds to the `NegLoss`

output of `resubPredict`

.

lossfun = @(~,S,~,~)mean(min(-S,[],2));

Compute the custom classification loss for the training data.

`resubLoss(Mdl,'LossFun',lossfun)`

ans = 0.0097

The average minimal binary loss for the training data is `0.0065`

.

## Input Arguments

`Mdl`

— Full, trained multiclass ECOC model

`ClassificationECOC`

model

Full, trained multiclass ECOC model, specified as a `ClassificationECOC`

model trained with `fitcecoc`

.

### Name-Value Arguments

Specify optional pairs of arguments as
`Name1=Value1,...,NameN=ValueN`

, where `Name`

is
the argument name and `Value`

is the corresponding value.
Name-value arguments must appear after other arguments, but the order of the
pairs does not matter.

*
Before R2021a, use commas to separate each name and value, and enclose*
`Name`

*in quotes.*

**Example: **`resubLoss(Mdl,'BinaryLoss','hamming','LossFun',@lossfun)`

specifies `'hamming'`

as the binary learner loss function and the custom
function handle `@lossfun`

as the overall loss function.

`BinaryLoss`

— Binary learner loss function

`"hamming"`

| `"linear"`

| `"logit"`

| `"exponential"`

| `"binodeviance"`

| `"hinge"`

| `"quadratic"`

| function handle

Binary learner loss function, specified as a built-in loss function name or function handle.

This table describes the built-in functions, where

*y*is the class label for a particular binary learner (in the set {–1,1,0}),_{j}*s*is the score for observation_{j}*j*, and*g*(*y*,_{j}*s*) is the binary loss formula._{j}Value Description Score Domain *g*(*y*,_{j}*s*)_{j}`"binodeviance"`

Binomial deviance (–∞,∞) log[1 + exp(–2 *y*)]/[2log(2)]_{j}s_{j}`"exponential"`

Exponential (–∞,∞) exp(– *y*)/2_{j}s_{j}`"hamming"`

Hamming [0,1] or (–∞,∞) [1 – sign( *y*)]/2_{j}s_{j}`"hinge"`

Hinge (–∞,∞) max(0,1 – *y*)/2_{j}s_{j}`"linear"`

Linear (–∞,∞) (1 – *y*)/2_{j}s_{j}`"logit"`

Logistic (–∞,∞) log[1 + exp(– *y*)]/[2log(2)]_{j}s_{j}`"quadratic"`

Quadratic [0,1] [1 – *y*(2_{j}*s*– 1)]_{j}^{2}/2The software normalizes binary losses so that the loss is 0.5 when

*y*= 0. Also, the software calculates the mean binary loss for each class [1]._{j}For a custom binary loss function, for example

`customFunction`

, specify its function handle`BinaryLoss=@customFunction`

.`customFunction`

has this form:bLoss = customFunction(M,s)

`M`

is the*K*-by-*B*coding matrix stored in`Mdl.CodingMatrix`

.`s`

is the 1-by-*B*row vector of classification scores.`bLoss`

is the classification loss. This scalar aggregates the binary losses for every learner in a particular class. For example, you can use the mean binary loss to aggregate the loss over the learners for each class.*K*is the number of classes.*B*is the number of binary learners.

For an example of passing a custom binary loss function, see Predict Test-Sample Labels of ECOC Model Using Custom Binary Loss Function.

This table identifies the default `BinaryLoss`

value, which depends on the
score ranges returned by the binary learners.

Assumption | Default Value |
---|---|

All binary learners are any of the following: Classification decision trees Discriminant analysis models *k*-nearest neighbor modelsLinear or kernel classification models of logistic regression learners Naive Bayes models
| `"quadratic"` |

All binary learners are SVMs or linear or kernel classification models of SVM learners. | `"hinge"` |

All binary learners are ensembles trained by
`AdaboostM1` or
`GentleBoost` . | `"exponential"` |

All binary learners are ensembles trained by
`LogitBoost` . | `"binodeviance"` |

You specify to predict class posterior probabilities by setting
`FitPosterior=true` in `fitcecoc` . | `"quadratic"` |

Binary learners are heterogeneous and use different loss functions. | `"hamming"` |

To check the default value, use dot notation to display the `BinaryLoss`

property of the trained model at the command line.

**Example: **`BinaryLoss="binodeviance"`

**Data Types: **`char`

| `string`

| `function_handle`

`Decoding`

— Decoding scheme

`"lossweighted"`

(default) | `"lossbased"`

Decoding scheme that aggregates the binary losses, specified as
`"lossweighted"`

or `"lossbased"`

. For more
information, see Binary Loss.

**Example: **`Decoding="lossbased"`

**Data Types: **`char`

| `string`

`LossFun`

— Loss function

`'classiferror'`

(default) | `'classifcost'`

| function handle

Loss function, specified as `'classiferror'`

,
`'classifcost'`

, or a function handle.

Specify the built-in function

`'classiferror'`

. In this case, the loss function is the classification error, which is the proportion of misclassified observations.Specify the built-in function

`'classifcost'`

. In this case, the loss function is the observed misclassification cost. If you use the default cost matrix (whose element value is 0 for correct classification and 1 for incorrect classification), then the loss values for`'classifcost'`

and`'classiferror'`

are identical.Or, specify your own function using function handle notation.

Assume that

`n = size(X,1)`

is the sample size and`K`

is the number of classes. Your function must have the signature`lossvalue = lossfun(C,S,W,Cost)`

, where:The output argument

`lossvalue`

is a scalar.You specify the function name (

).`lossfun`

`C`

is an`n`

-by-`K`

logical matrix with rows indicating the class to which the corresponding observation belongs. The column order corresponds to the class order in`Mdl.ClassNames`

.Construct

`C`

by setting`C(p,q) = 1`

if observation`p`

is in class`q`

, for each row. Set all other elements of row`p`

to`0`

.`S`

is an`n`

-by-`K`

numeric matrix of negated loss values for the classes. Each row corresponds to an observation. The column order corresponds to the class order in`Mdl.ClassNames`

. The input`S`

resembles the output argument`NegLoss`

of`resubPredict`

.`W`

is an`n`

-by-1 numeric vector of observation weights. If you pass`W`

, the software normalizes its elements to sum to`1`

.`Cost`

is a`K`

-by-`K`

numeric matrix of misclassification costs. For example,`Cost = ones(K) – eye(K)`

specifies a cost of 0 for correct classification and 1 for misclassification.

Specify your function using

`'LossFun',@lossfun`

.

**Data Types: **`char`

| `string`

| `function_handle`

`Options`

— Estimation options

`[]`

(default) | structure array

Estimation options, specified as a structure array as returned by `statset`

.

To invoke parallel computing you need a Parallel Computing Toolbox™ license.

**Example: **`Options=statset(UseParallel=true)`

**Data Types: **`struct`

`Verbose`

— Verbosity level

`0`

(default) | `1`

Verbosity level, specified as `0`

or `1`

.
`Verbose`

controls the number of diagnostic messages that the
software displays in the Command Window.

If `Verbose`

is `0`

, then the software does not display
diagnostic messages. Otherwise, the software displays diagnostic messages.

**Example: **`Verbose=1`

**Data Types: **`single`

| `double`

## More About

### Classification Error

The *classification error* has the form

$$L={\displaystyle \sum _{j=1}^{n}{w}_{j}{e}_{j}},$$

where:

*w*is the weight for observation_{j}*j*. The software renormalizes the weights to sum to 1.*e*= 1 if the predicted class of observation_{j}*j*differs from its true class, and 0 otherwise.

In other words, the classification error is the proportion of observations misclassified by the classifier.

### Observed Misclassification Cost

The *observed misclassification cost* has the form

$$L={\displaystyle \sum _{j=1}^{n}{w}_{j}}{c}_{{y}_{j}{\widehat{y}}_{j}},$$

where:

*w*is the weight for observation_{j}*j*. The software renormalizes the weights to sum to 1.$${c}_{{y}_{j}{\widehat{y}}_{j}}$$ is the user-specified cost of classifying an observation into class $${\widehat{y}}_{j}$$ when its true class is

*y*._{j}

### Binary Loss

The *binary loss* is a function of the class and classification score that determines how well a binary learner classifies an observation into the class. The *decoding scheme* of an ECOC model specifies how the software aggregates the binary losses and determines the predicted class for each observation.

Assume the following:

*m*is element (_{kj}*k*,*j*) of the coding design matrix*M*—that is, the code corresponding to class*k*of binary learner*j*.*M*is a*K*-by-*B*matrix, where*K*is the number of classes, and*B*is the number of binary learners.*s*is the score of binary learner_{j}*j*for an observation.*g*is the binary loss function.$$\widehat{k}$$ is the predicted class for the observation.

The software supports two decoding schemes:

*Loss-based decoding*[2] (`Decoding`

is`"lossbased"`

) — The predicted class of an observation corresponds to the class that produces the minimum average of the binary losses over all binary learners.$$\widehat{k}=\underset{k}{\text{argmin}}\frac{1}{B}{\displaystyle \sum _{j=1}^{B}\left|{m}_{kj}\right|g}({m}_{kj},{s}_{j}).$$

*Loss-weighted decoding*[3] (`Decoding`

is`"lossweighted"`

) — The predicted class of an observation corresponds to the class that produces the minimum average of the binary losses over the binary learners for the corresponding class.$$\widehat{k}=\underset{k}{\text{argmin}}\frac{{\displaystyle \sum _{j=1}^{B}\left|{m}_{kj}\right|g}({m}_{kj},{s}_{j})}{{\displaystyle \sum}_{j=1}^{B}\left|{m}_{kj}\right|}.$$

The denominator corresponds to the number of binary learners for class

*k*. [1] suggests that loss-weighted decoding improves classification accuracy by keeping loss values for all classes in the same dynamic range.

The `predict`

, `resubPredict`

, and
`kfoldPredict`

functions return the negated value of the objective
function of `argmin`

as the second output argument
(`NegLoss`

) for each observation and class.

This table summarizes the supported binary loss functions, where
*y _{j}* is a class label for a particular
binary learner (in the set {–1,1,0}),

*s*is the score for observation

_{j}*j*, and

*g*(

*y*,

_{j}*s*) is the binary loss function.

_{j}Value | Description | Score Domain | g(y,_{j}s)_{j} |
---|---|---|---|

`"binodeviance"` | Binomial deviance | (–∞,∞) | log[1 +
exp(–2y)]/[2log(2)]_{j}s_{j} |

`"exponential"` | Exponential | (–∞,∞) | exp(–y)/2_{j}s_{j} |

`"hamming"` | Hamming | [0,1] or (–∞,∞) | [1 – sign(y)]/2_{j}s_{j} |

`"hinge"` | Hinge | (–∞,∞) | max(0,1 – y)/2_{j}s_{j} |

`"linear"` | Linear | (–∞,∞) | (1 – y)/2_{j}s_{j} |

`"logit"` | Logistic | (–∞,∞) | log[1 +
exp(–y)]/[2log(2)]_{j}s_{j} |

`"quadratic"` | Quadratic | [0,1] | [1 – y(2_{j}s –
1)]_{j}^{2}/2 |

The software normalizes binary losses so that the loss is 0.5 when
*y _{j}* = 0, and aggregates using the average
of the binary learners [1].

Do not confuse the binary loss with the overall classification loss (specified by the
`LossFun`

name-value argument of the `resubLoss`

and
`resubPredict`

object functions), which measures how well an ECOC
classifier performs as a whole.

## References

[1] Allwein, E., R. Schapire, and Y. Singer. “Reducing multiclass to binary: A unifying approach for margin classiﬁers.” *Journal of Machine Learning Research*. Vol. 1, 2000, pp. 113–141.

[2] Escalera, S., O. Pujol, and P.
Radeva. “Separability of ternary codes for sparse designs of error-correcting output codes.”
*Pattern Recog. Lett.* Vol. 30, Issue 3, 2009, pp.
285–297.

[3] Escalera, S., O. Pujol, and P. Radeva. “On the decoding process in ternary error-correcting output codes.” *IEEE Transactions on Pattern Analysis and Machine Intelligence*. Vol. 32, Issue 7, 2010, pp. 120–134.

## Extended Capabilities

### Automatic Parallel Support

Accelerate code by automatically running computation in parallel using Parallel Computing Toolbox™.

To run in parallel, specify the `Options`

name-value argument in the call to
this function and set the `UseParallel`

field of the
options structure to `true`

using
`statset`

:

`Options=statset(UseParallel=true)`

For more information about parallel computing, see Run MATLAB Functions with Automatic Parallel Support (Parallel Computing Toolbox).

### GPU Arrays

Accelerate code by running on a graphics processing unit (GPU) using Parallel Computing Toolbox™.

This function fully supports GPU arrays. For more information, see Run MATLAB Functions on a GPU (Parallel Computing Toolbox).

## Version History

**Introduced in R2014b**

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